Provenance-example-cwl.xml

Provenance example for cwl workflow project (id = "example-cwl")

<Provenance xmlns="http://hl7.org/fhir">
  <id value="example-cwl"/>
  <text><status value="generated"/><div xmlns="http://www.w3.org/1999/xhtml"><p><b>Generated Narrative with Details</b></p><p><b>id</b>: cwl-example</p><p><b>target</b>: <a href="http://build.fhir.org/sequence-example-pgx-1.html">Sequence/example-pgx-1</a></p><p><b>period</b>: Nov 30, 2016 --&gt; (ongoing)</p><p><b>recorded</b>: Dec 1, 2016 8:12:14 AM</p><p><b>reason</b>: profiling Short Tandem Repeats (STRs) from high throughput sequencing data. (Details:
         [not stated] code null = 'null', stated as 'profiling Short Tandem Repeats (STRs)
         from
         high throughput sequencing data.')</p><h3>Agents</h3><table><tr><td>-</td><td><b>Role</b></td><td><b>Who[x]</b></td></tr><tr><td>*</td><td>Author (Details: http://hl7.org/fhir/provenance-participant-role code author = 'Author',
             stated as 'null')</td><td><a href="http://build.fhir.org/patient-example.html">Patient/example</a></td></tr></table><h3>Entities</h3><table><tr><td>-</td><td><b>Role</b></td><td><b>Reference</b></td></tr><tr><td>*</td><td>source</td><td><a href="https://github.com/common-workflow-language/workflows/blob/master/workflows/lobSTR/lobSTR-workflow.c
            wl">CWL example</a></td></tr></table></div>   </text>
  <target>
    <reference value="Sequence/example-pgx-1"/>
  </target>
  <period>
    <start value="2016-11-30"/>
  </period>
  <recorded value="2016-12-01T08:12:14+10:00"/>
  <reason>
      <display value="profiling Short Tandem Repeats (STRs) from high throughput sequencing data."/>
  </reason>

 <agent> 
    <role>
      <system value="http://hl7.org/fhir/provenance-participant-role"/>
      <code value="author"/>
    </role>
    <whoReference>
      <reference value="Patient/example"/>
    </whoReference>
  </agent>

<entity>
  <role value="source"/>
  <reference>
    <reference value="https://github.com/common-workflow-language/workflows/blob/master/workflows/lobSTR/lobSTR-workflow.c
      wl"/>
    <identifier>
      <type>
        <coding>
       <system value="https://github.com/common-workflow-language/workflows"/>
           <code value="CWL"/>
           <display value="lobSTR"/>
        </coding>
      </type>
      <value value="https://github.com/common-workflow-language/workflows/blob/master/workflows/lobSTR/lobSTR-workflow.c
        wl"/>
    </identifier>
  <display value="CWL example"/>
  </reference>
</entity>
</Provenance>